Uh oh Wade, you opened Pandora's box...and I'm the bearer of bad news.
Probably should have just replaced the nosecone seals and been done with it. You need the special too for the R&P, and more to get a bearing pressed and set to spec, plus others to set the shift forks, diff preload etc. Those tools are all expensive and hard to find, an definitely not available in Billings, so I would leave this to the pros.
A place called Rancho is known to sell and rebuild VW transaxles
http://ranchotransaxles.com and you can buy a rebuilt IRS T1 trans for $600, with a 2 year warranty, with a good core. So I would stop now, and get it back together and call Rancho.